quevedor2/CCLid
Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

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quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets
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API

API for quevedor2/CCLid
Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

Global functions
.addCumPos Man page Source code
.addSegSd Man page Source code
.blankGr Man page Source code
.chkAndDownload Man page Source code
.compSegs Man page Source code
.createFormula Source code
.demo Man page Source code
.demoDeconvolution Man page Source code
.demoP Source code
.demoRna Source code
.estimateDrift Man page Source code
.estimateZcutoff Man page Source code
.filt Man page Source code
.fixGT Man page Source code
.genMatchSnpDiff Man page Source code
.genNonmatchSnpDiff Man page Source code
.getChrLength Man page Source code
.getDerivedFrom Man page Source code Source code
.getDrift Man page Source code
.getSynonymous Man page Source code Source code
.getVariantFeatures Man page Source code
.grepNA Man page Source code
.jsonToGr Man page Source code
.meltDf Man page Source code
.normBAF Man page Source code
.overlapProbeset Man page Source code
.revComp Man page Source code
.vcf2AffyGT Man page Source code
.zval Man page Source code
addSegDat Man page Source code
affy.omni Man page
annoDemoMat Man page Source code
annotateSegments Man page Source code
assemblePredDat Man page Source code
assignGrpIDs Man page Source code
availableRefCCL Man page
bafDrift Man page Source code
balanceGrps Man page Source code
ccl_table Man page
checkAgainst Man page Source code
checkForConcordance Man page Source code
checkMse Man page Source code
cin70 Man page
combineSamples Man page Source code
compareVcf Man page Source code
corWithDrug Man page Source code
demoSample Man page Source code
downloadRefCCL Man page
driftOverlap Man page Source code
driftOverlapMetric Man page Source code
findCclPairs Man page Source code
formatRefMat Man page Source code
fullpull Man page Source code
genDemoData Man page Source code
genErrBp Man page Source code
getBafDrifts Man page Source code
getCNDrifts Man page Source code
getCVCL Man page Source code
getCinScore Man page Source code
getGeneExpr Man page Source code
getGenes Man page Source code
getSegSD Man page Source code
getVcfDrifts Man page Source code
gne.meta Man page
loadInPSets Man page Source code
loadRef Man page Source code
mapVariantFeat Man page Source code
mapVcf2Affy Man page Source code
meta.df Man page
mkPredictions Man page Source code
multiDriftPlot Man page Source code
overlapPos Man page Source code
plot.CCLid Man page
plot.SimpleCCLid Man page
plot.multiObj Man page
plotFracDrift Man page Source code
plotHist Man page Source code
readinRnaFileMapping Man page
rna.meta.df Man page
segmentDrift Man page Source code
sigDiffBaf Man page Source code
similarityMatrix Man page Source code
snp6.dat Man page
splitConcordanceVals Man page Source code
splitToMNM Man page Source code
summarizeFracDrift Man page Source code
trainLogit Man page Source code
quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.

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