overlapPos: overlapPos

In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

Description

parent function that handles how overlaps are done between COMParing group and REFerence datasets

Usage

overlapPos(comp, ref, mapping = "probeset", snp6.dat)

Arguments

comp	Input comparison data with a $Probe_Set_ID column
ref	Reference probeset order where rownames are Probe_Set_IDs
mapping	If "probeset", will using $Probe_Set_ID from comp dataframe.
snp6.dat	SNP6 probeset genomic position, accessible from CCLid::ccl_table Else, it will use the rownames of ref as the probe set IDs

quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.