Description Usage Arguments Value
View source: R/paper_functions.R
Gets the drift GRanges and genomic fraction of drift for any pair of cell lines from different datasets given L2R data
1 2 3 4 5 6 7 8 9 10 11 | getCNDrifts(
ref.l2r,
alt.l2r,
fdat,
seg.id,
raw.id,
cell.ids,
verbose = TRUE,
meta.df,
...
)
|
ref.l2r |
Matrix of L2R data of genomic bins by samples for reference dataset |
alt.l2r |
Matrix of L2R data of genomic bins by samples for comparison dataset |
fdat |
segment data |
seg.id |
element ID of ref.l2r that specifies the segment L2Rs |
raw.id |
element ID of ref.l2r that specifies the raw probeset L2Rs |
cell.ids |
All cell line IDs to compare drift between |
verbose |
Verbose |
meta.df |
Cell line metadata, accessible from CCLid::ccl_table |
... |
Extra param |
CN drift object
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