plot.CCLid: plot.CCLid plot() function for CCLid adjusted DNAcopy segment...

In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

Description

plot.CCLid plot() function for CCLid adjusted DNAcopy segment objects

Usage

## S3 method for class 'CCLid'
plot(
  obj,
  sample.size = 600,
  low.sig.alpha = 0.01,
  hi.sig.alpha = 0.2,
  add.chr.sep = TRUE,
  atype = "sd",
  add.points = TRUE,
  min.z = 3,
  ...
)

Arguments

obj	CCLid object returned from bafDrift()
sample.size	Number of points to plot to allow for quicker plotting
low.sig.alpha	low-confident drift regions alpha value for red
hi.sig.alpha	high-confident drift regions alpha value for red
add.chr.sep	Adds lines to delimit chromosomes
atype	default=sd
add.points	Adds points to the segments
min.z	minimum z to report a drift change

quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.