segmentDrift: segmentDrift
In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets
Description
Usage
Arguments
Value
Description
Segments a matrix (D) given a set of genomic coordinates
stored in fdat using either CBS or PCF
Usage
1
segmentDrift(segmenter = "PCF", fdat, D, kmin = 5, rm.homo = FALSE)
Arguments
segmenter
either CBS or PCF (Default: PCF)
fdat
Genomic data-frame where first two columns are "chrom" and "pos"
D
Matrix corresponding to fdat containing distances to plot, samples in
columns, rows are the genomic pos
kmin
Minimum number of SNPs to consider (default = 5)
rm.homo
Remove homozygous SNPs (Default = FALSE)
Value
CNA object
quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.
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Description Usage Arguments Value
Description
Segments a matrix (D) given a set of genomic coordinates stored in fdat using either CBS or PCF
Usage
1 | segmentDrift(segmenter = "PCF", fdat, D, kmin = 5, rm.homo = FALSE)
|
Arguments
segmenter |
either CBS or PCF (Default: PCF) |
fdat |
Genomic data-frame where first two columns are "chrom" and "pos" |
D |
Matrix corresponding to fdat containing distances to plot, samples in columns, rows are the genomic pos |
kmin |
Minimum number of SNPs to consider (default = 5) |
rm.homo |
Remove homozygous SNPs (Default = FALSE) |
Value
CNA object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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