Description Usage Arguments Value
Segments a matrix (D) given a set of genomic coordinates stored in fdat using either CBS or PCF
1 | segmentDrift(segmenter = "PCF", fdat, D, kmin = 5, rm.homo = FALSE)
|
segmenter |
either CBS or PCF (Default: PCF) |
fdat |
Genomic data-frame where first two columns are "chrom" and "pos" |
D |
Matrix corresponding to fdat containing distances to plot, samples in columns, rows are the genomic pos |
kmin |
Minimum number of SNPs to consider (default = 5) |
rm.homo |
Remove homozygous SNPs (Default = FALSE) |
CNA object
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