getBafDrifts: getBafDrifts

In quevedor2/CCLid: Compares Cancer Cell Line Genotypes Against Pharmacogenomic Datasets

Description

Gets the drift GRanges and genomic fraction of drift for any pair of cell lines from different datasets given

Usage

getBafDrifts(cl.pairs, x.mat, ref.ds = NULL, alt.ds = NULL, snp6.dat, ...)

Arguments

cl.pairs	Vector of indices for cell line pairs in x.mat
x.mat	Input matrix containing probeset BAF data
ref.ds	Reference dataset (e.g. CCLE)
alt.ds	Comparing dataset (e.g. GDSC)
snp6.dat	SNP6 probeset genomic position, accessible from CCLid::ccl_table
...	Extra param

Value

Drift object

quevedor2/CCLid documentation built on July 15, 2020, 4:05 a.m.