hadd_psm_apexes: Helper of adding PSM apexes

In qzhang503/proteoQ: Processing and Informatic Analysis of Mass Spectrometrirc Data

Helper of adding PSM apexes

Description

By each PSM file of TMTSet1_LCMSinj1.txt, TMTSet2_LCMSinj1.txt etc.

Usage

hadd_psm_apexes(
  file = NULL,
  dfs = NULL,
  trace_files = NULL,
  fits = NULL,
  dat_dir = NULL,
  path_ms1 = NULL,
  lfq_ret_tol = 60L,
  ok_mbr = TRUE
)

Arguments

file	A PSM file name, e.g., TMTSet1_LCMSinj1_PSM_N.txt.
dfs	A list split of PSM data under the file at different RAW_File.
trace_files	The file names of ms1apexes_ corresponding to dfs.
fits	The models of retention-time fittings corresponding to dfs.
dat_dir	A working directory.
path_ms1	The file path to MS1 data from Mzion.
lfq_ret_tol	Retention time tolerance for LFQ.
ok_mbr	Logical; OK to perform MBR or not.

qzhang503/proteoQ documentation built on Dec. 14, 2024, 12:27 p.m.