edg2idx | convert edge table to named parent vector |
getAllParents | get common parents for a list of taxon IDs |
getAncestor | get lowest common ancestor |
get.children | simple children retrieval |
getChildren | get all chilrden of a node |
getID | get taxon IDs from taxon names |
getLineage | get NCBI taxonomy rank lineages |
getName | gets taxon names from taxon IDs |
get.parents | simple lineage retrieval |
getParents | lineage retrieval |
getRank | gets taxon ranks from taxon IDs |
grepName | find taxon IDs for species name patterns |
idx2edg | convert named parent vector to edge table |
ncbitax | ncbitax: a simple NCBI taxonomy parser |
parseNCBITaxonomy | load tbi taxonomy files |
reduceTaxonomy | reduced taxonomy tree for faster searches |
tax2newick | convert NCBI taxonomy sub trees to newick format |
tax2phylo | converts an NCBI taxonomy object to an 'ape::phylo' tree |
updateIDs | update a list of taxonomy IDs |
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