grepName: find taxon IDs for species name patterns
In raim/ncbitax: Simple base R parser for NCBI Taxonomy
Description
Usage
Arguments
Examples
Description
Simply uses base R's grep to grep for a
name pattern in the official NCBI taxon names and returns
all matching taxon IDs as a table with columns ID and name.
Usage
1
Arguments
pattern
regular expression, see argument pattern
in grep
tax
NCBI taxonomy object
...
arguments to grep
Examples
1
grepName("Synechocystis", tax)
raim/ncbitax documentation built on Aug. 6, 2020, 7:29 a.m.
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Description Usage Arguments Examples
Description
Simply uses base R's grep to grep for a
name pattern in the official NCBI taxon names and returns
all matching taxon IDs as a table with columns ID and name.
Usage
1 |
Arguments
pattern |
regular expression, see argument |
tax |
NCBI taxonomy object |
... |
arguments to |
Examples
1 | grepName("Synechocystis", tax)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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