reduceTaxonomy: reduced taxonomy tree for faster searches
In raim/ncbitax: Simple base R parser for NCBI Taxonomy

This reduces the full NCBI taxonomy to the subset containing all taxons in ids. This makes all subsequent searches much faster.

1	reduceTaxonomy(ids, tax)

`ids`	vector of taxon IDs
`tax`	NCBI taxonomy object

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rtax <- reduceTaxonomy(c("1148","1140"), tax)
lapply(tax, length)
lapply(rtax, length)

raim/ncbitax documentation built on Aug. 6, 2020, 7:29 a.m.

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README.md

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