parseNCBITaxonomy: load tbi taxonomy files
In raim/ncbitax: Simple base R parser for NCBI Taxonomy
Description
Usage
Arguments
Examples
Description
load tbi taxonomy files
Usage
1
2
Arguments
taxd
path to unpacked NCBI taxonomy (taxdump.tar.gz)
names
load species names, takes long to load!
ranks
load rank names
merged
load list of merged (outdated) taxon IDs and their replacement
verb
print progress messages
Examples
1
2
taxdb <- "/data/taxonomy/db"
tax <- parseNCBITaxonomy(taxdb)
raim/ncbitax documentation built on Aug. 6, 2020, 7:29 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
load tbi taxonomy files
Usage
1 2 |
Arguments
taxd |
path to unpacked NCBI taxonomy (taxdump.tar.gz) |
names |
load species names, takes long to load! |
ranks |
load rank names |
merged |
load list of merged (outdated) taxon IDs and their replacement |
verb |
print progress messages |
Examples
1 2 | taxdb <- "/data/taxonomy/db"
tax <- parseNCBITaxonomy(taxdb)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.