clusterCluster: calculates overlaps between two clusterings

Description Usage Arguments

View source: R/clusterTools.R

Description

calculates mutual overlaps between two clusterings of the same data set using hypergeometric distribution statistics for significantly enriched or deprived mutual overlaps; TODO: specify wich cl will be rows/columns and to which percent refers to

Usage

1
2
clusterCluster(cl1, cl2, na.string = "na", cl1.srt, cl2.srt,
  alternative = c("greater"))

Arguments

cl1

clustering 1; a vector of cluster associations or an object of class "clustering" by segmenTier's clusterTimeseries

cl2

clustering 2; see argument cl1

na.string

replace NA or empty strings by ‘<na.string>’

cl1.srt

optional cluster sorting of clustering 1

cl2.srt

optional cluster sorting of clustering 2

alternative

a character string specifying the alternative hypothesis, must be one of ‘"greater"’ to calculate enrichment (default), ‘"less"’ to calculate deprivation, or ‘"two.sided"’ to report the more more signficant p-value of both


raim/segmenTools documentation built on Nov. 9, 2018, 5:38 p.m.