getOverlapStats: Statistics of overlaps between two segment sets.

Description Usage Arguments

View source: R/segmenTools.R

Description

Statistics of overlaps between two segment sets.

Usage

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getOverlapStats(ovl, ovlth = 0.8, minj = 0.8, minf = 0.2, hrng = c(0.8,
  1.2), tnum = NA, qnum = NA, qid = NA, tid = NA)

Arguments

ovl

overlap table from segmentOverlap

ovlth

threshold fraction of overlap of target and query to be counted as 'good' hit

minj

the minimal Jaccard index above which the fraction is reported as JaccPrcnt

minf

fraction cutoff, the Jaccard index reported for this fraction of test sets is reported as JaccCutoff

hrng

lower and upper thresholds of the ratio CDF (query length/target length); the fraction of 'best' hits within this range will be reported as 'height'

tnum

number of targets in the original call, required for total CDF ('acdf')

qnum

number queries in the original call, just passed to results

qid

ID for the query set, just passed on to results and used in plot

tid

ID for the target set, just passed on to results and used in plot


raim/segmenTools documentation built on Nov. 9, 2018, 5:38 p.m.