coor2bed: export internal coordinate format to bed file format

In raim/segmenTools: Tools for Functional Genome Exploration

export internal coordinate format to bed file format

Description

export internal coordinate format to bed file format

Usage

coor2bed(
  coor,
  file,
  coors = c(chr = "chr", start = "start", end = "end", strand = "strand"),
  reverse = c("-", -1),
  name,
  score,
  prefix,
  verb = 1
)

Arguments

coor	genomic coordinates
file	optional name for bed output file
coors	column names of coordinate columns
reverse	reverse strand characters
name	column name for bed file name column (column 4)
score	column name for bed file score column (column 5)
prefix	prefix to be added to the name and score columns (column 4,5), used by segmenTools interface to bedtools for unique names.
verb	verbosity level, 0: silent

See Also

bed2coor

raim/segmenTools documentation built on April 25, 2024, 10:14 a.m.