fillGenome: Get inter-segments
In raim/segmenTools: Tools for Functional Genome Exploration

fillGenome

R Documentation

Get inter-segments

finds all ranges not present in the input segments, e.g. non-coding regions in a list of coding regions

fillGenome(seg, chrS, indexed = TRUE, expand = TRUE)

`seg`	input segments with indexed coordinates (see `coor2index`)
`chrS`	a chromosome index, indicating at wich positions chromosomes start; this is required for handling chromosome ends and forward and reverse strand values
`indexed`	boolean value indicating whether the coordinates in argument `seg` have already been indexed; if not `coor2index`) will be applied and the returned inter-segments will be mapped back to chromosome coordinates by `index2coor`
`expand`	if `TRUE` the returned inter-segments will contain the same columns as the input; otherwise only coordinates are returned