fillGenome: Get inter-segments

Description Usage Arguments

View source: R/segmenTools.R

Description

finds all ranges not present in the input segments, e.g. non-coding regions in a list of coding regions

Usage

1
fillGenome(seg, chrS, indexed = TRUE, expand = TRUE)

Arguments

seg

input segments with indexed coordinates (see coor2index)

chrS

a chromosome index, indicating at wich positions chromosomes start; this is required for handling chromosome ends and forward and reverse strand values

indexed

boolean value indicating whether the coordinates in argument seg have already been indexed; if not coor2index) will be applied and the returned inter-segments will be mapped back to chromosome coordinates by index2coor

expand

if TRUE the returned inter-segments will contain the same columns as the input; otherwise only coordinates are returned


raim/segmenTools documentation built on Nov. 9, 2018, 5:38 p.m.