rdinnager/slimrlang
Write SLiM Population Genetics Simulation Scripts in R

Package index
Search the rdinnager/slimrlang package
Vignettes
Functions
692
Source code
20
Man pages
153
Home
/
GitHub
/
rdinnager/slimrlang: Write SLiM Population Genetics Simulation Scripts in R
/
API

API for rdinnager/slimrlang
Write SLiM Population Genetics Simulation Scripts in R

Global functions
%.% Man page
%>% Man page
%?% Man page
.G Man page
.G$addMutations Man page
.G$addNewDrawnMutation Man page
.G$addNewMutation Man page
.G$containsMarkerMutation Man page
.G$containsMutations Man page
.G$countOfMutationsOfType Man page
.G$mutationsOfType Man page
.G$nucleotides Man page
.G$output Man page
.G$outputMS Man page
.G$outputVCF Man page
.G$positionsOfMutationsOfType Man page
.G$readFromMS Man page
.G$readFromVCF Man page
.G$removeMutations Man page
.G$sumOfMutationsOfType Man page
.GE Man page
.GE$setGenomicElementType Man page
.GET Man page
.GET$getValue Man page
.GET$setMutationFractions Man page
.GET$setMutationMatrix Man page
.GET$setValue Man page
.I Man page
.I$containsMutations Man page
.I$countOfMutationsOfType Man page
.I$getValue Man page
.I$relatedness Man page
.I$setSpatialPosition Man page
.I$setValue Man page
.I$sumOfMutationsOfType Man page
.I$uniqueMutationsOfType Man page
.IT Man page
.IT$distance Man page
.IT$distanceToPoint Man page
.IT$drawByStrength Man page
.IT$evaluate Man page
.IT$getValue Man page
.IT$interactingNeighborCount Man page
.IT$interactionDistance Man page
.IT$nearestInteractingNeighbors Man page
.IT$nearestNeighbors Man page
.IT$nearestNeighborsOfPoint Man page
.IT$setInteractionFunction Man page
.IT$setValue Man page
.IT$strength Man page
.IT$totalOfNeighborStrengths Man page
.IT$unevaluate Man page
.Init Man page
.Init$initializeAncestralNucleotides Man page
.Init$initializeGeneConversion Man page
.Init$initializeGenomicElement Man page
.Init$initializeGenomicElementType Man page
.Init$initializeHotspotMap Man page
.Init$initializeInteractionType Man page
.Init$initializeMutationRate Man page
.Init$initializeMutationType Man page
.Init$initializeMutationTypeNuc Man page
.Init$initializeRecombinationRate Man page
.Init$initializeSLiMModelType Man page
.Init$initializeSLiMOptions Man page
.Init$initializeSex Man page
.Init$initializeTreeSeq Man page
.M Man page
.M$getValue Man page
.M$setMutationType Man page
.M$setSelectionCoeff Man page
.M$setValue Man page
.MT Man page
.MT$drawSelectionCoefficient Man page
.MT$getValue Man page
.MT$setDistribution Man page
.MT$setValue Man page
.P Man page
.P$addCloned Man page
.P$addCrossed Man page
.P$addEmpty Man page
.P$addRecombinant Man page
.P$addSelfed Man page
.P$cachedFitness Man page
.P$configureDisplay Man page
.P$defineSpatialMap Man page
.P$getValue Man page
.P$outputMSSample Man page
.P$outputSample Man page
.P$outputVCFSample Man page
.P$pointInBounds Man page
.P$pointPeriodic Man page
.P$pointReflected Man page
.P$pointStopped Man page
.P$pointUniform Man page
.P$removeSubpopulation Man page
.P$sampleIndividuals Man page
.P$setCloningRate Man page
.P$setMigrationRates Man page
.P$setSelfingRate Man page
.P$setSexRatio Man page
.P$setSpatialBounds Man page
.P$setSubpopulationSize Man page
.P$setValue Man page
.P$spatialMapColor Man page
.P$spatialMapValue Man page
.P$subsetIndividuals Man page
.P$takeMigrants Man page
.S Man page
.S$getValue Man page
.S$setValue Man page
.SB Man page
.SB$codonsToAminoAcids Man page
.SB$mm16To256 Man page
.SB$mmJukesCantor Man page
.SB$mmKimura Man page
.SB$nucleotideCounts Man page
.SB$nucleotideFrequencies Man page
.SB$nucleotidesToCodons Man page
.SEB Man page
.SS Man page
.SS$addSubpop Man page
.SS$addSubpopSplit Man page
.SS$countOfMutationsOfType Man page
.SS$deregisterScriptBlock Man page
.SS$getValue Man page
.SS$mutationCounts Man page
.SS$mutationFrequencies Man page
.SS$mutationsOfType Man page
.SS$outputFixedMutations Man page
.SS$outputFull Man page
.SS$outputMutations Man page
.SS$outputUsage Man page
.SS$readFromPopulationFile Man page
.SS$recalculateFitness Man page
.SS$registerEarlyEvent Man page
.SS$registerFitnessCallback Man page
.SS$registerInteractionCallback Man page
.SS$registerLateEvent Man page
.SS$registerMateChoiceCallback Man page
.SS$registerModifyChildCallback Man page
.SS$registerMutationCallback Man page
.SS$registerRecombinationCallback Man page
.SS$registerReproductionCallback Man page
.SS$rescheduleScriptBlock Man page
.SS$setValue Man page
.SS$simulationFinished Man page
.SS$treeSeqCoalesced Man page
.SS$treeSeqOutput Man page
.SS$treeSeqRememberIndividuals Man page
.SS$treeSeqSimplify Man page
.c Man page
.c$ancestralNucleotides Man page
.c$drawBreakpoints Man page
.c$setAncestralNucleotides Man page
.c$setGeneConversion Man page
.c$setHotspotMap Man page
.c$setMutationRate Man page
.c$setRecombinationRate Man page
.data Man page
.onLoad Source code
:= Man page
Chromosome Man page
Chromosome$ancestralNucleotides Man page
Chromosome$drawBreakpoints Man page
Chromosome$setAncestralNucleotides Man page
Chromosome$setGeneConversion Man page
Chromosome$setHotspotMap Man page
Chromosome$setMutationRate Man page
Chromosome$setRecombinationRate Man page
Genome Man page
Genome$addMutations Man page
Genome$addNewDrawnMutation Man page
Genome$addNewMutation Man page
Genome$containsMarkerMutation Man page
Genome$containsMutations Man page
Genome$countOfMutationsOfType Man page
Genome$mutationsOfType Man page
Genome$nucleotides Man page
Genome$output Man page
Genome$outputMS Man page
Genome$outputVCF Man page
Genome$positionsOfMutationsOfType Man page
Genome$readFromMS Man page
Genome$readFromVCF Man page
Genome$removeMutations Man page
Genome$sumOfMutationsOfType Man page
GenomicElement Man page
GenomicElement$setGenomicElementType Man page
GenomicElementType Man page
GenomicElementType$getValue Man page
GenomicElementType$setMutationFractions Man page
GenomicElementType$setMutationMatrix Man page
GenomicElementType$setValue Man page
Individual Man page
Individual$containsMutations Man page
Individual$countOfMutationsOfType Man page
Individual$getValue Man page
Individual$relatedness Man page
Individual$setSpatialPosition Man page
Individual$setValue Man page
Individual$sumOfMutationsOfType Man page
Individual$uniqueMutationsOfType Man page
Initialize Man page
Initialize$initializeAncestralNucleotides Man page
Initialize$initializeGeneConversion Man page
Initialize$initializeGenomicElement Man page
Initialize$initializeGenomicElementType Man page
Initialize$initializeHotspotMap Man page
Initialize$initializeInteractionType Man page
Initialize$initializeMutationRate Man page
Initialize$initializeMutationType Man page
Initialize$initializeMutationTypeNuc Man page
Initialize$initializeRecombinationRate Man page
Initialize$initializeSLiMModelType Man page
Initialize$initializeSLiMOptions Man page
Initialize$initializeSex Man page
Initialize$initializeTreeSeq Man page
InteractionType Man page
InteractionType$distance Man page
InteractionType$distanceToPoint Man page
InteractionType$drawByStrength Man page
InteractionType$evaluate Man page
InteractionType$getValue Man page
InteractionType$interactingNeighborCount Man page
InteractionType$interactionDistance Man page
InteractionType$nearestInteractingNeighbors Man page
InteractionType$nearestNeighbors Man page
InteractionType$nearestNeighborsOfPoint Man page
InteractionType$setInteractionFunction Man page
InteractionType$setValue Man page
InteractionType$strength Man page
InteractionType$totalOfNeighborStrengths Man page
InteractionType$unevaluate Man page
Mutation Man page
Mutation$getValue Man page
Mutation$setMutationType Man page
Mutation$setSelectionCoeff Man page
Mutation$setValue Man page
MutationType Man page
MutationType$drawSelectionCoefficient Man page
MutationType$getValue Man page
MutationType$setDistribution Man page
MutationType$setValue Man page
SLiMBuiltin Man page
SLiMBuiltin$codonsToAminoAcids Man page
SLiMBuiltin$mm16To256 Man page
SLiMBuiltin$mmJukesCantor Man page
SLiMBuiltin$mmKimura Man page
SLiMBuiltin$nucleotideCounts Man page
SLiMBuiltin$nucleotideFrequencies Man page
SLiMBuiltin$nucleotidesToCodons Man page
SLiMEidosBlock Man page
SLiMSim Man page
SLiMSim$addSubpop Man page
SLiMSim$addSubpopSplit Man page
SLiMSim$countOfMutationsOfType Man page
SLiMSim$deregisterScriptBlock Man page
SLiMSim$getValue Man page
SLiMSim$mutationCounts Man page
SLiMSim$mutationFrequencies Man page
SLiMSim$mutationsOfType Man page
SLiMSim$outputFixedMutations Man page
SLiMSim$outputFull Man page
SLiMSim$outputMutations Man page
SLiMSim$outputUsage Man page
SLiMSim$readFromPopulationFile Man page
SLiMSim$recalculateFitness Man page
SLiMSim$registerEarlyEvent Man page
SLiMSim$registerFitnessCallback Man page
SLiMSim$registerInteractionCallback Man page
SLiMSim$registerLateEvent Man page
SLiMSim$registerMateChoiceCallback Man page
SLiMSim$registerModifyChildCallback Man page
SLiMSim$registerMutationCallback Man page
SLiMSim$registerRecombinationCallback Man page
SLiMSim$registerReproductionCallback Man page
SLiMSim$rescheduleScriptBlock Man page
SLiMSim$setValue Man page
SLiMSim$simulationFinished Man page
SLiMSim$treeSeqCoalesced Man page
SLiMSim$treeSeqOutput Man page
SLiMSim$treeSeqRememberIndividuals Man page
SLiMSim$treeSeqSimplify Man page
SLiMify Source code
SLiMify_all Source code
Subpopulation Man page
Subpopulation$addCloned Man page
Subpopulation$addCrossed Man page
Subpopulation$addEmpty Man page
Subpopulation$addRecombinant Man page
Subpopulation$addSelfed Man page
Subpopulation$cachedFitness Man page
Subpopulation$configureDisplay Man page
Subpopulation$defineSpatialMap Man page
Subpopulation$getValue Man page
Subpopulation$outputMSSample Man page
Subpopulation$outputSample Man page
Subpopulation$outputVCFSample Man page
Subpopulation$pointInBounds Man page
Subpopulation$pointPeriodic Man page
Subpopulation$pointReflected Man page
Subpopulation$pointStopped Man page
Subpopulation$pointUniform Man page
Subpopulation$removeSubpopulation Man page
Subpopulation$sampleIndividuals Man page
Subpopulation$setCloningRate Man page
Subpopulation$setMigrationRates Man page
Subpopulation$setSelfingRate Man page
Subpopulation$setSexRatio Man page
Subpopulation$setSpatialBounds Man page
Subpopulation$setSubpopulationSize Man page
Subpopulation$setValue Man page
Subpopulation$spatialMapColor Man page
Subpopulation$spatialMapValue Man page
Subpopulation$subsetIndividuals Man page
Subpopulation$takeMigrants Man page
Substitution Man page
Substitution$getValue Man page
Substitution$setValue Man page
`%.%` Source code
`%?%` Source code Source code
`code<-` Source code
`end_gen<-` Source code
`modify<-.slimr_script` Source code
`modify<-` Source code
addCloned Man page Source code
addCrossed Man page Source code
addEmpty Man page Source code
addMutations Man page Source code
addNewDrawnMutation Man page Source code
addNewMutation Man page Source code
addRecombinant Man page Source code
addSelfed Man page Source code
addSubpop Man page Source code
addSubpopSplit Man page Source code
ancestralNucleotides Man page Source code
as.character.slimr_code Source code
as.character.slimr_script Source code
as_label Man page
as_name Man page
as_slim_text Source code
as_slim_text.slimr_script Man page Source code
as_slimr_script Man page Source code
assert_valid_code Source code
cachedFitness Man page Source code
code Source code
codonsToAminoAcids Man page Source code
configureDisplay Man page Source code
containsMarkerMutation Man page Source code
containsMutations Man page Source code Source code
countOfMutationsOfType Man page Source code Source code Source code
defineSpatialMap Man page Source code
deregisterScriptBlock Man page Source code
distance Man page Source code
distanceToPoint Man page Source code
drawBreakpoints Man page Source code
drawByStrength Man page Source code
drawSelectionCoefficient Man page Source code
early Source code
end_gen Source code
enquo Man page
enquos Man page
evaluate Man page Source code
expr Man page
fitness Source code
format.slimr_code Source code
format.slimr_script Source code
format.slimr_script_coll Source code
gather_out Source code
gather_out_one Source code
gather_tmplt Source code
gather_tmplt_one Source code
getValue Man page Source code Source code Source code Source code Source code Source code Source code Source code
get_block Source code
initialize Source code
initializeAncestralNucleotides Man page Source code
initializeGeneConversion Man page Source code
initializeGenomicElement Man page Source code
initializeGenomicElementType Man page Source code
initializeHotspotMap Man page Source code
initializeInteractionType Man page Source code
initializeMutationRate Man page Source code
initializeMutationType Man page Source code
initializeMutationTypeNuc Man page Source code
initializeRecombinationRate Man page Source code
initializeSLiMModelType Man page Source code
initializeSLiMOptions Man page Source code
initializeSex Man page Source code
initializeTreeSeq Man page Source code
interactingNeighborCount Man page Source code
interaction Source code
interactionDistance Man page Source code
late Source code
mateChoice Source code
mm16To256 Man page Source code
mmJukesCantor Man page Source code
mmKimura Man page Source code
modifyChild Source code
mutationCounts Man page Source code
mutationFrequencies Man page Source code
mutationsOfType Man page Source code Source code
nearestInteractingNeighbors Man page Source code
nearestNeighbors Man page Source code
nearestNeighborsOfPoint Man page Source code
new_slimr_code Source code
new_slimr_script Source code
new_slimr_script_coll Source code
nucleotideCounts Man page Source code
nucleotideFrequencies Man page Source code
nucleotides Man page Source code
nucleotidesToCodons Man page Source code
obj_print_data.slimr_code Source code
obj_print_data.slimr_script Source code
obj_print_data.slimr_script_coll Source code
obj_print_footer.slimr_script Source code
out_replace Source code
output Man page Source code
outputFixedMutations Man page Source code
outputFull Man page Source code
outputMS Man page Source code
outputMSSample Man page Source code
outputMutations Man page Source code
outputSample Man page Source code
outputUsage Man page Source code
outputVCF Man page Source code
outputVCFSample Man page Source code
pointInBounds Man page Source code
pointPeriodic Man page Source code
pointReflected Man page Source code
pointStopped Man page Source code
pointUniform Man page Source code
positionsOfMutationsOfType Man page Source code
process_forcing Source code
process_output Source code
process_template Source code
readFromMS Man page Source code
readFromPopulationFile Man page Source code
readFromVCF Man page Source code
recalculateFitness Man page Source code
recombination Source code
reconstruct Source code
reconstruct.slimr_script Man page Source code
registerEarlyEvent Man page Source code
registerFitnessCallback Man page Source code
registerInteractionCallback Man page Source code
registerLateEvent Man page Source code
registerMateChoiceCallback Man page Source code
registerModifyChildCallback Man page Source code
registerMutationCallback Man page Source code
registerRecombinationCallback Man page Source code
registerReproductionCallback Man page Source code
relatedness Man page Source code
removeMutations Man page Source code
removeSubpopulation Man page Source code
reproduction Source code
rescheduleScriptBlock Man page Source code
sampleIndividuals Man page Source code
setAncestralNucleotides Man page Source code
setCloningRate Man page Source code
setDistribution Man page Source code
setGeneConversion Man page Source code
setGenomicElementType Man page Source code
setHotspotMap Man page Source code
setInteractionFunction Man page Source code
setMigrationRates Man page Source code
setMutationFractions Man page Source code
setMutationMatrix Man page Source code
setMutationRate Man page Source code
setMutationType Man page Source code
setRecombinationRate Man page Source code
setSelectionCoeff Man page Source code
setSelfingRate Man page Source code
setSexRatio Man page Source code
setSpatialBounds Man page Source code
setSpatialPosition Man page Source code
setSubpopulationSize Man page Source code
setValue Man page Source code Source code Source code Source code Source code Source code Source code Source code
simulationFinished Man page Source code
slim_block Man page Source code
slim_script Man page Source code
slimr_clip_original Man page Source code
slimr_code Source code
slimr_code_Rify Source code
slimr_code_Rify_all Source code
slimr_code_add_semicolons Source code
slimr_code_detect_output Source code
slimr_code_from_text_dos Source code
slimr_code_from_text_dots Source code
slimr_code_from_text_else_overhang Source code
slimr_code_from_text_modulus Source code
slimr_code_from_text_returns Source code
slimr_code_from_text_style Source code
slimr_code_from_text_style_all Source code
slimr_code_from_text_ternary Source code
slimr_code_from_text_whiles Source code
slimr_code_remove_comments Source code
slimr_code_remove_special_classes Source code
slimr_code_replace_dots Source code
slimr_code_replace_modulus Source code
slimr_code_replace_ternary Source code
slimr_open_original Man page Source code
slimr_output Man page Source code
slimr_script_coll Source code
slimr_script_render Man page Source code
slimr_template Source code
slimr_template_info Man page
slimr_write Man page Source code
slimr_write.character Source code
slimr_write.slimr_script Source code
slimrlang-vctrs Man page
sout Source code
spatialMapColor Man page Source code
spatialMapValue Man page Source code
stmplt Source code
strength Man page Source code
subsetIndividuals Man page Source code
sumOfMutationsOfType Man page Source code Source code
sym Man page
syms Man page
takeMigrants Man page Source code
tidyeval Man page
tmplt_replace Source code
totalOfNeighborStrengths Man page Source code
treeSeqCoalesced Man page Source code
treeSeqOutput Man page Source code
treeSeqRememberIndividuals Man page Source code
treeSeqSimplify Man page Source code
unevaluate Man page Source code
uniqueMutationsOfType Man page Source code
vec_cast.slimr_script.slimr_script Source code
vec_ptype2.slimr_code.slimr_code Source code
vec_ptype2.slimr_script.slimr_script Source code
vec_ptype_abbr.slimr_code Source code
vec_ptype_abbr.slimr_script Source code
vec_ptype_abbr.slimr_script_coll Source code
vec_ptype_full.slimr_code Source code
vec_ptype_full.slimr_script Source code
vec_ptype_full.slimr_script_coll Source code
rdinnager/slimrlang documentation built on June 20, 2020, 8:17 p.m.

R Package Documentation

rdrr.io home R language documentation Run R code online

Browse R Packages

CRAN packages Bioconductor packages R-Forge packages GitHub packages

We want your feedback!

Note that we can't provide technical support on individual packages. You should contact the package authors for that.
GitHub issue tracker
ian@mutexlabs.com
Personal blog

 
Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.

Close