matchDiseases: MATCH diseases of PhysicalEntity/Reaction/Pathway

Description Usage Arguments Value See Also Examples

View source: R/queries.R

Description

To find Diseases related to a PhysicalEntity or an Event, or get PhysicalEntities/Events associated with a Disease in reverse

Usage

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matchDiseases(
  id = NULL,
  displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

id

stId or dbId of a PhysicalEntity/Event/Disease

displayName

displayName of a PhysicalEntity/Event/Disease

species

name or taxon id or dbId or abbreviation of aspecies

type

return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

Disease(s) related to the given PhysicalEntity/Reaction/Pathway; or instances related to the given Disease

See Also

Other match: matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

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disease <- "neuropathy"
# matchDiseases(displayName=disease, species="M. musculus", type="row")
# matchDiseases(id="R-HSA-162588", type="graph")

reactome/ReactomeGraph4R documentation built on May 29, 2021, 7:42 a.m.