matchInteractors: MATCH interactors

Description Usage Arguments Value See Also Examples

View source: R/queries.R

Description

To retrieve interactions of a given PhysicalEntity (PE), it first finds the ReferenceEntity matched with the PE, then get the Interactions having "interactor" relationship with the ReferenceEntity.

Usage

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matchInteractors(
  pe.id = NULL,
  pe.displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

pe.id

stId or dbId of a PhysicalEntity

pe.displayName

displayName of a PhysicalEntity

species

name or taxon id or dbId or abbreviation of specified species

type

return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

interactions of a given PhysicalEntity

See Also

Other match: matchDiseases(), matchHierarchy(), matchObject(), matchPEroles(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

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pe.id <- 996766
# matchInteractors(pe.id)

reactome/ReactomeGraph4R documentation built on May 29, 2021, 7:42 a.m.