matchInteractors: MATCH interactors

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

MATCH interactors

Description

To retrieve interactions of a given PhysicalEntity (PE), it first finds the ReferenceEntity matched with the PE, then get the Interactions having "interactor" relationship with the ReferenceEntity.

Usage

matchInteractors(
  pe.id = NULL,
  pe.displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

pe.id	stId or dbId of a PhysicalEntity
pe.displayName	displayName of a PhysicalEntity
species	name or taxon id or dbId or abbreviation of specified species
type	return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

interactions of a given PhysicalEntity

See Also

Other match: matchDiseases(), matchHierarchy(), matchObject(), matchPEroles(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

pe.id <- 996766
# matchInteractors(pe.id)

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.