matchPEroles: MATCH roles of PhysicalEntity

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

MATCH roles of PhysicalEntity

Description

This function retrieves the role(s) of a given PhysicalEntity including:

• Input

• Output

• Regulator

• Catalyst

Usage

matchPEroles(
  pe.id = NULL,
  pe.displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

pe.id	stId or dbId of a PhysicalEntity
pe.displayName	displayName of a PhysicalEntity
species	name or taxon id or dbId or abbreviation of a species
type	return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

information of the given PhysicalEntity and its role(s)

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

stId <- "R-HSA-8944354"
# matchPEroles(pe.id = stId, type = "graph")

# matchPEroles(pe.displayName = "2SUMO1:MITF [nucleoplasm]", 
#              species = "pig", type = "row")

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.