reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

Pathways, reactions, and biological entities in Reactome knowledge are systematically represented as an ordered network. Instances are represented as nodes and relationships between instances as edges; they are all stored in the Reactome Graph Database. This package serves as an interface to query the interconnected data from a local Neo4j database, with the aim of minimizing the usage of Neo4j Cypher queries.

Getting started

Package details

Bioconductor views DataImport GraphAndNetwork Network Pathways Reactome
LicenseApache License (>= 2)
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.