matchReactionsInPathway: MATCH Reactions in associated Pathway

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

MATCH Reactions in associated Pathway

Description

This method could find all Reactions connected with a given Pathway by the relationship 'hasEvent'. Also, the input can be a Reaction, the result would then be Pathway(s) linked via 'hasEvent' together with other Reactions linked with the Pathways(s).

Usage

matchReactionsInPathway(
  event.id = NULL,
  event.displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

event.id	stId or dbId of an Event
event.displayName	displayName of an Event
species	name or taxon id or dbId or abbreviation of a species
type	return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

Reactions connected to the given Pathway/Reaction via 'hasEvent' relationships

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReferrals()

Examples

reaction <- "R-HSA-1369062"
# matchReactionsInPathway(event.id=reaction, type="graph")
# matchReactionsInPathway("R-HSA-5682285", type="row")

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.