matchReactionsInPathway: MATCH Reactions in associated Pathway

Description Usage Arguments Value See Also Examples

View source: R/queries.R

Description

This method could find all Reactions connected with a given Pathway by the relationship 'hasEvent'. Also, the input can be a Reaction, the result would then be Pathway(s) linked via 'hasEvent' together with other Reactions linked with the Pathways(s).

Usage

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matchReactionsInPathway(
  event.id = NULL,
  event.displayName = NULL,
  species = NULL,
  type = c("row", "graph")
)

Arguments

event.id

stId or dbId of an Event

event.displayName

displayName of an Event

species

name or taxon id or dbId or abbreviation of a species

type

return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

Reactions connected to the given Pathway/Reaction via 'hasEvent' relationships

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPaperObjects(), matchPrecedingAndFollowingEvents(), matchReferrals()

Examples

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reaction <- "R-HSA-1369062"
# matchReactionsInPathway(event.id=reaction, type="graph")
# matchReactionsInPathway("R-HSA-5682285", type="row")

reactome/ReactomeGraph4R documentation built on May 29, 2021, 7:42 a.m.