matchPaperObjects: MATCH objects related to a paper

Description Usage Arguments Value See Also Examples

View source: R/queries.R

Description

Fetch Reactome instances related to a paper by its PubMed id or title

Usage

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matchPaperObjects(
  pubmed.id = NULL,
  displayName = NULL,
  type = c("row", "graph")
)

Arguments

pubmed.id

PubMed identifier of a paper

displayName

paper title

type

return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

Reactome instances associated with a paper

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

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## fetch Reactome instances by paper title
paper <- "Chaperone-mediated autophagy at a glance"
# matchPaperObjects(displayName=paper)

## fetch Reactome instances by pubmed id
# matchPaperObjects(pubmed.id="20797626", type="graph")
# matchPaperObjects(pubmed.id="23515720", type="row")

reactome/ReactomeGraph4R documentation built on May 29, 2021, 7:42 a.m.