matchPaperObjects: MATCH objects related to a paper

In reactome/ReactomeGraph4R: Interface for the Reactome Graph Database

MATCH objects related to a paper

Description

Fetch Reactome instances related to a paper by its PubMed id or title

Usage

matchPaperObjects(
  pubmed.id = NULL,
  displayName = NULL,
  type = c("row", "graph")
)

Arguments

pubmed.id	PubMed identifier of a paper
displayName	paper title
type	return results as a list of dataframes ('row'), or as a graph object ('graph')

Value

Reactome instances associated with a paper

See Also

Other match: matchDiseases(), matchHierarchy(), matchInteractors(), matchObject(), matchPEroles(), matchPrecedingAndFollowingEvents(), matchReactionsInPathway(), matchReferrals()

Examples

## fetch Reactome instances by paper title
paper <- "Chaperone-mediated autophagy at a glance"
# matchPaperObjects(displayName=paper)

## fetch Reactome instances by pubmed id
# matchPaperObjects(pubmed.id="20797626", type="graph")
# matchPaperObjects(pubmed.id="23515720", type="row")

reactome/ReactomeGraph4R documentation built on May 15, 2023, 8:45 p.m.