cell.cycle: Cell cycle phase prediction

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Cell cycle phase prediction

Description

This function takes an object of class iCellR and assignes cell cycle stage for the cells.

Usage

cell.cycle(
  object = NULL,
  scoring.List = NULL,
  return.stats = FALSE,
  scoring.method = "tirosh"
)

Arguments

object	A data frame containing gene counts for cells.
scoring.List	Genes that are used as a marker for phases.
return.stats	Return the data or object. If FALSE the object would be returned.
scoring.method	Choose from "coverage" or "tirosh" for scoring method.

Value

The data frame object

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.