load10x: Load 10X data as data.frame

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Load 10X data as data.frame

Description

This function takes 10X data files barcodes.tsv, genes.tsv and matrix.mtx and converts them to proper matrix file for iCellR.

Usage

load10x(dir.10x = NULL, gene.name = 2)

Arguments

dir.10x	A directory that includes the 10X barcodes.tsv, genes.tsv and matrix.mtx files.
gene.name	Gene names or ids column number, default = 2.

Value

The data frame object

Examples

my.data <- load10x(system.file("extdata", "filtered_gene_bc_matrices", package = "iCellR"))

# See first few rows and columns
head(my.data)[1:5]

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.