clust.ord: Sort and relabel the clusters randomly or based on pseudotime

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Sort and relabel the clusters randomly or based on pseudotime

Description

This function takes an object of class iCellR and re-ordersthe clusters based on pseudotime (distance).

Usage

clust.ord(
  x = NULL,
  top.rank = 500,
  dist.method = "euclidean",
  clust.method = "complete",
  how.to.order = "distance"
)

Arguments

x	An object of class iCellR.
top.rank	A number. Taking the top genes ranked by base mean, default = 500.
dist.method	Choose from "euclidean", "maximum", "manhattan", "canberra", "binary" or "minkowski", default = "euclidean".
clust.method	Choose from "ward.D", "ward.D2", "single", "complete", "average", "mcquitty", "median" or "centroid", default = "complete".
how.to.order	Choose from "distance" and "random".

Value

An object of class iCellR.

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.