gg.cor: Gene-gene correlation. This function helps to visulaize and...

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Gene-gene correlation. This function helps to visulaize and calculate gene-gene correlations.

Description

Gene-gene correlation. This function helps to visulaize and calculate gene-gene correlations.

Usage

gg.cor(
  x = NULL,
  data.type = "imputed",
  gene1 = NULL,
  gene2 = NULL,
  conds = NULL,
  clusts = NULL,
  cell.size = 1,
  cell.transparency = 0.5,
  interactive = TRUE,
  out.name = "plot"
)

Arguments

x	An object of class iCellR.
data.type	Choose from imputed and main, default = "imputed".
gene1	First gene name.
gene2	Second gene name.
conds	Filter only one condition (only one), default is all conditions.
clusts	Choose clusters to plot.
cell.size	A numeric value for the size of the cells, default = 1.
cell.transparency	A numeric value between 0 to 1, default = 0.5.
interactive	If TRUE an html interactive file will be made, default = TRUE.
out.name	Output name for html file if interactive = TRUE, default = "plot".

Value

An object of class iCellR

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.