clust.avg.exp: Create a data frame of mean expression of genes per cluster

In rezakj/iCellR: Analyzing High-Throughput Single Cell Sequencing Data

Create a data frame of mean expression of genes per cluster

Description

This function takes an object of class iCellR and creates an average gene expression for every cluster.

Usage

clust.avg.exp(
  x = NULL,
  data.type = "main",
  conds.to.avg = NULL,
  rounding.digits = 4,
  low.cell.filt = 5,
  round.num = FALSE
)

Arguments

x	An object of class iCellR.
data.type	Choose from "main", "atac", "atac.imputed" and "imputed", default = "main"
conds.to.avg	Choose the conditions you want to average, default = NULL (all conditions).
rounding.digits	integer indicating the number of decimal places (round) or significant digits (signif) to be used.
low.cell.filt	filter out clusters with low number of cells, default = 5.
round.num	Rounding of Numbers, default = FALSE.

Value

An object of class iCellR.

rezakj/iCellR documentation built on March 29, 2024, 6:55 p.m.