API for richelbilderbeek/bbbq
The Bilderbeek Bianchi and Bogaart Question
| Global functions | |
|---|---|
| %>% | Man page |
| are_detected | Man page Source code |
| bbbq | Man page |
| calc_p_det_tmh_mut | Man page Source code |
| calculate_overlap | Man page Source code |
| check_haplotype | Man page Source code |
| check_ic50_prediction_tool | Man page Source code |
| check_ic50_prediction_tool_installation | Man page Source code |
| check_mhc_haplotype_name | Man page Source code |
| check_protein_sequences_length | Man page Source code |
| check_proteome_type | Man page Source code |
| check_target_name | Man page Source code |
| check_topology_prediction_tool | Man page Source code |
| convert_triplet_to_amino_acid | Man page Source code |
| correlate_to_hydrophobicity | Man page Source code |
| create_consensus_topology_conservation | Man page Source code |
| create_haplotypes_lut | Man page Source code |
| create_msa | Man page Source code |
| create_n_mers | Man page Source code |
| create_n_mers_tibble | Man page Source code |
| create_proteins_lut | Man page Source code |
| create_random_extreme_peptide | Man page Source code |
| create_random_hydrophobic_peptide | Man page Source code |
| create_random_peptide_with_hydrophobicity | Man page Source code |
| create_random_peptides | Man page Source code |
| create_random_tmh | Man page Source code |
| default_params_doc | Man page Source code |
| download_bergseng_et_al_2015_sup_1 | Man page Source code |
| download_ic50s_lut | Man page Source code |
| explode | Man page Source code |
| get_aa_transition_matrix | Man page Source code |
| get_adjacent_sequences | Man page Source code |
| get_bbbq_theme | Man page Source code |
| get_bergseng_et_al_2015_sup_1 | Man page Source code |
| get_bergseng_et_al_2015_sup_1_epitope_sequences | Man page Source code |
| get_bergseng_et_al_2015_sup_1_url | Man page Source code |
| get_covid_proteome_filename | Man page Source code |
| get_genetic_code | Man page Source code |
| get_hlas | Man page Source code |
| get_ic50_percentile_binder | Man page Source code |
| get_ic50_threshold | Man page Source code |
| get_ic50s_lut | Man page Source code |
| get_mhc1_allele_names | Man page Source code |
| get_mhc1_haplotypes | Man page Source code |
| get_mhc1_peptide_length | Man page Source code |
| get_mhc2_allele_names | Man page Source code |
| get_mhc2_haplotype_occurance | Man page Source code |
| get_mhc2_haplotypes | Man page Source code |
| get_mhc2_peptide_length | Man page Source code |
| get_mhc_allele_names | Man page Source code |
| get_mhc_haplotypes | Man page Source code |
| get_mhc_peptide_length | Man page Source code |
| get_non_tmh_peptides_from_elution | Man page Source code |
| get_protein_lengths | Man page Source code |
| get_proteome | Man page Source code |
| get_proteome_filename | Man page Source code |
| get_target_english_name | Man page Source code |
| get_target_names | Man page Source code |
| get_test_covid_proteome_filename | Man page Source code |
| get_test_human_proteome_filename | Man page Source code |
| get_test_myco_proteome_filename | Man page Source code |
| get_test_proteome_filename | Man page Source code |
| get_tmh_lengths | Man page Source code |
| get_tmh_peptides_from_elution | Man page Source code |
| get_topology | Man page Source code |
| get_topology_filename | Man page Source code |
| get_transition_rate | Man page Source code |
| get_transition_rates | Man page Source code |
| get_uniprot_id | Man page Source code |
| hyPref | Man page Source code |
| hydrophobe_controls | Man page Source code |
| hydrophobe_overlap_controls | Man page Source code |
| hydrophobicity_distribution | Man page Source code |
| hydrophobicity_distribution_elution_data | Man page Source code |
| is_detected | Man page Source code |
| is_peptide | Man page Source code |
| nlapply | Man page Source code |
| predict_binders | Man page Source code |
| predict_counts | Man page Source code |
| predict_counts_per_proteome | Man page Source code |
| predict_ic50s | Man page Source code |
| predict_n_coincidence_tmh_peptide | Man page Source code |
| prepare_data | Man page Source code |
| replace_nth_char | Man page Source code |
| simplify_haplotype_names | Man page Source code |
