convertSeqFreqToBaseFreq: Convert sequence pattern frequencies to base frequencies...
In rmpiro/decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting
View source: R/helper_functions_for_sequences.R
convertSeqFreqToBaseFreq R Documentation
Convert sequence pattern frequencies to base frequencies (internal function)
Description
Convert sequence pattern frequencies (Alexandrov-like) to frequencies for
individual bases (Shiraishi-like).
Usage
convertSeqFreqToBaseFreq(frequencies, sigType)
Arguments
frequencies
Vector for frequencies of individual sequence patterns
sigType
Signature type information as returned by
determineTypeNumBasesAndTrDir
Value
Shiraishi signature-like matrix of per-base nucleotide frequencies
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
rmpiro/decompTumor2Sig documentation built on May 15, 2022, 3:27 a.m.
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View source: R/helper_functions_for_sequences.R
| convertSeqFreqToBaseFreq | R Documentation |
Convert sequence pattern frequencies to base frequencies (internal function)
Description
Convert sequence pattern frequencies (Alexandrov-like) to frequencies for individual bases (Shiraishi-like).
Usage
convertSeqFreqToBaseFreq(frequencies, sigType)
Arguments
frequencies |
Vector for frequencies of individual sequence patterns |
sigType |
Signature type information as returned by
|
Value
Shiraishi signature-like matrix of per-base nucleotide frequencies
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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