plotAlexandrovModel: plotAlexandrovModel (internal function)

In rmpiro/decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting

plotAlexandrovModel (internal function)

Description

'plotAlexandrovModel()' plots a single signature or the mutation frequency data for a single genome of the Alexandrov-type model.

Usage

plotAlexandrovModel(mutData, numBases, trDir, colors = NULL,
strip = NULL)

Arguments

mutData	(Mandatory) The signature or genome mutation frequency data to be plotted.
numBases	The number of bases of the sequence pattern.
trDir	Logical value specifying whether transcription strand information is present.
colors	Vector of six colors to be used for the base change data. If NULL (default), the colors are set to those used by the COSMIC website.
strip	Background color for strip labels. If NULL (default), "papayawhip" will be used.

Value

Returns (or draws) a plot according to the Alexandrov model of mutational signatures.

Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <[e-mail]> or <[e-mail]>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

rmpiro/decompTumor2Sig documentation built on May 15, 2022, 3:27 a.m.