determineTypeNumBasesAndTrDir: determineTypeNumBasesAndTrDir (internal function)
In rmpiro/decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting
View source: R/determineTypeNumBasesAndTrDir.R
determineTypeNumBasesAndTrDir R Documentation
determineTypeNumBasesAndTrDir (internal function)
Description
For a given signature or genome representation: determine the
type (Shiraishi or Alexandrov), the number of bases, and whether
transcription-strand information is included.
Usage
determineTypeNumBasesAndTrDir(mutData)
Arguments
mutData
The mutation frequency data of the signature or genome.
Value
A list object composed of: "type"=type of signature or genome;
"numBases"=number of bases of the sequence patterns; and
"trDir"=logical value indicating whether transcription-strand information
has been considered in the mutation frequency data.
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
rmpiro/decompTumor2Sig documentation built on May 15, 2022, 3:27 a.m.
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View source: R/determineTypeNumBasesAndTrDir.R
| determineTypeNumBasesAndTrDir | R Documentation |
determineTypeNumBasesAndTrDir (internal function)
Description
For a given signature or genome representation: determine the type (Shiraishi or Alexandrov), the number of bases, and whether transcription-strand information is included.
Usage
determineTypeNumBasesAndTrDir(mutData)
Arguments
mutData |
The mutation frequency data of the signature or genome. |
Value
A list object composed of: "type"=type of signature or genome; "numBases"=number of bases of the sequence patterns; and "trDir"=logical value indicating whether transcription-strand information has been considered in the mutation frequency data.
Author(s)
Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario
M. Piro
E-Mail: <rmpiro@gmail.com> or <rosariomichael.piro@polimi.it>
References
http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational
signatures active in individual tumors. BMC Bioinformatics
20(Suppl 4):152.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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