isShiraishiSet: isShiraishiSet

In rmpiro/decompTumor2Sig: Decomposition of individual tumors into mutational signatures by signature refitting

isShiraishiSet

Description

'isShiraishiSet()' checks whether the input object is a set (list) of numeric objects compatible with the Shiraishi format (matrices or data.frames of probabilities; 6 columns, each row sums up to 1). NOTE: These can also be genomes compatible with the Shiraishi format!

Usage

isShiraishiSet(x)

Arguments

x	Object to be checked.

Value

Logical value (true or false).

Author(s)

Rosario M. Piro
Politecnico di Milano
Maintainer: Rosario M. Piro
E-Mail: <[e-mail]> or <[e-mail]>

References

http://rmpiro.net/decompTumor2Sig/
Krueger, Piro (2019) decompTumor2Sig: Identification of mutational signatures active in individual tumors. BMC Bioinformatics 20(Suppl 4):152.

See Also

decompTumor2Sig
isSignatureSet
readShiraishiSignatures

Examples

### get Alexandrov signatures from COSMIC
signAlexandrov <- readAlexandrovSignatures()

### convert them to the Shiraishi model
signShiraishi <- convertAlexandrov2Shiraishi(signAlexandrov)

isShiraishiSet(signShiraishi)

rmpiro/decompTumor2Sig documentation built on May 15, 2022, 3:27 a.m.