API for rz6/DIADEM
Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models
| Global functions | |
|---|---|
| %>% | Man page |
| HiCcomparator | Man page Source code |
| HiCglm | Man page |
| aggregate_diagonals | Man page |
| balance | Man page Source code |
| best_fit_bilinear | Man page |
| bootstrap_dataset | Man page |
| bootstrap_interactions | Man page |
| bootstrap_sparse | Man page |
| compartment_ranges | Man page |
| constructGLM | Man page |
| decay_correlation.HiCcomparator | Man page |
| dense2sparse | Man page |
| differential_interactions.HiCglm | Man page |
| do_pca | Man page |
| dominating_signal.HiCcomparator | Man page |
| hicdiff.HiCglm | Man page |
| hicdiff2mtx | Man page |
| image_plot_na | Man page Source code |
| interactions2tads | Man page |
| interactions2zscores | Man page |
| intersect_tads | Man page |
| left.max | Man page |
| local.max | Man page |
| local.min | Man page |
| map2tads | Man page |
| mean_expected | Man page |
| merge.HiCcomparator | Man page |
| move_contacts | Man page |
| neighborhood | Man page |
| pc2mtx | Man page |
| plot_contact_map | Man page Source code |
| plot_diff_map | Man page Source code |
| plot_pc_vector | Man page Source code |
| plot_regions | Man page Source code |
| plot_with_inset | Man page Source code |
| proportions | Man page |
| read_dense | Man page |
| read_npz | Man page |
| read_size | Man page |
| remove_unmappable | Man page |
| restore_unmappable_mtx | Man page |
| restore_unmappable_vec | Man page |
| right.min | Man page |
| sample_alri | Man page |
| sample_hic_data | Man page |
| save_npz | Man page |
| significance | Man page |
| simulate_contacts | Man page |
| simulate_map.HiCglm | Man page |
| simulate_null.HiCglm | Man page |
| sparse2dense | Man page |
| sparse2interactions | Man page |
| superdiag | Man page |
