compartment_ranges: Calculates ranges of each consecutive compartment along given...
In rz6/DIADEM: Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models
Description
Usage
Arguments
Value
Examples
Description
Entries with the same sign (i.e. positive or negative) comprise the same compartment. Positives are assigned to A compartment and negatives to B compartment.
Usage
1
Arguments
pc
numeric, compartment vector (eigenvector)
Value
data.frame where each row corrspond to interval of consecutive same sign values of eigenvector; columns are start, end and compartment
Examples
1
2
3
# make artificial eigenvector
ev <- c(-0.3,-0.5,0.2,0.3,0.4,0.4,-0.5,0.2,0.1,0.3,-0.9,-0.7)
compartment_ranges(ev)
rz6/DIADEM documentation built on Dec. 31, 2019, 3:51 a.m.
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Description Usage Arguments Value Examples
Description
Entries with the same sign (i.e. positive or negative) comprise the same compartment. Positives are assigned to A compartment and negatives to B compartment.
Usage
1 |
Arguments
pc |
numeric, compartment vector (eigenvector) |
Value
data.frame where each row corrspond to interval of consecutive same sign values of eigenvector; columns are start, end and compartment
Examples
1 2 3 | # make artificial eigenvector
ev <- c(-0.3,-0.5,0.2,0.3,0.4,0.4,-0.5,0.2,0.1,0.3,-0.9,-0.7)
compartment_ranges(ev)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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