interactions2zscores: Convert interactions into zscores
In rz6/DIADEM: Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models
Description
Usage
Arguments
Value
Description
Given single (i.e. one chromosome) contact map in sparse format convert its interactions into zscores diagonal-wise.
Usage
1
interactions2zscores(mtx.sparse, substitute.val = TRUE)
Arguments
mtx.sparse
data frame representing contact map
substitute.val
logical indicating whether zscores should be substituted into val
Value
data frame with interaction zscores calculated over every diagonal separatelly
rz6/DIADEM documentation built on Dec. 31, 2019, 3:51 a.m.
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Description Usage Arguments Value
Description
Given single (i.e. one chromosome) contact map in sparse format convert its interactions into zscores diagonal-wise.
Usage
1 | interactions2zscores(mtx.sparse, substitute.val = TRUE)
|
Arguments
mtx.sparse |
data frame representing contact map |
substitute.val |
logical indicating whether zscores should be substituted into val |
Value
data frame with interaction zscores calculated over every diagonal separatelly
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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