Files in rz6/DIADEM
Hi-C differential analysis via dependency modelling of chromatin interactions with generalized linear models
.gitattributes
.gitignore
.gitmodules
DESCRIPTION
DIADEM.Rproj
LICENSE
NAMESPACE
R/data.R
R/differential_analysis.R
R/glmrob.nb.r
R/plotting_functions.R
R/utility_functions.R
R/utils-pipe.R
README.md
data/sample_hic_data.rda
inst/REFERENCES.bib
man/HiCcomparator.Rd
man/HiCglm.Rd
man/aggregate_diagonals.Rd
man/balance.Rd
man/best_fit_bilinear.Rd
man/bootstrap_dataset.Rd
man/bootstrap_interactions.Rd
man/bootstrap_sparse.Rd
man/compartment_ranges.Rd
man/constructGLM.Rd
man/decay_correlation.HiCcomparator.Rd
man/dense2sparse.Rd
man/differential_interactions.HiCglm.Rd
man/do_pca.Rd
man/dominating_signal.HiCcomparator.Rd
man/hicdiff.HiCglm.Rd
man/hicdiff2mtx.Rd
man/image_plot_na.Rd
man/interactions2tads.Rd
man/interactions2zscores.Rd
man/intersect_tads.Rd
man/left.max.Rd
man/local.max.Rd
man/local.min.Rd
man/map2tads.Rd
man/mean_expected.Rd
man/merge.HiCcomparator.Rd
man/move_contacts.Rd
man/neighborhood.Rd
man/pc2mtx.Rd
man/pipe.Rd
man/plot_contact_map.Rd
man/plot_diff_map.Rd
man/plot_pc_vector.Rd
man/plot_regions.Rd
man/plot_with_inset.Rd
man/proportions.Rd
man/read_dense.Rd
man/read_npz.Rd
man/read_size.Rd
man/remove_unmappable.Rd
man/restore_unmappable_mtx.Rd
man/restore_unmappable_vec.Rd
man/right.min.Rd
man/sample_alri.Rd
man/sample_hic_data.Rd
man/save_npz.Rd
man/significance.Rd
man/simulate_contacts.Rd
man/simulate_map.HiCglm.Rd
man/simulate_null.HiCglm.Rd
man/sparse2dense.Rd
man/sparse2interactions.Rd
man/superdiag.Rd
vignettes/DIADEM.Rmd
vignettes/DIADEM.bib
vignettes/images/FC-map-ICE-IMR90-vs-MSC-chr21.png
vignettes/images/IMR90vsMSC_chr18and19_HiCnorm_vs_ICE.png
vignettes/images/coverage-IMR90-vs-MSC-IC.png
vignettes/images/decay-IMR90-vs-MSC-IC.png
vignettes/images/model_summary.png
