Files in rz6/DIADEM
Normalization avoiding modelling and detection of differential interactions in Hi-C data via GLM.

.gitattributes
.gitignore
DESCRIPTION
DIADEM.Rproj
DIADEM.pdf
DIADEM_vignette.html
LICENSE
NAMESPACE
R/data.R R/differential_analysis.R R/plotting_functions.R R/utility_functions.R R/utils-pipe.R README.md
data/sample_hic_maps.rda
data/sample_tads.rda
inst/extdata/IMR90-MboI-1_40kb-raw.npz
inst/extdata/MSC-HindIII-1_40kb-raw.npz
inst/extdata/MSC-HindIII-1_40kb-raw.tadIS
man/HiCcomparator.Rd man/HiCglm.Rd man/IMR90-MboI-1_40kb-raw_maps.Rd man/MSC-HindIII-1_40kb-raw_maps.Rd man/MSC-HindIII-1_40kb-raw_tads.Rd man/artificial_lri.Rd man/balance.Rd man/best_fit_bilinear.Rd man/bootstrap_dataset.Rd man/bootstrap_interactions.Rd man/bootstrap_sparse.Rd man/compartment_ranges.Rd man/constructGLM.Rd man/crosses.Rd man/decay_correlation.HiCcomparator.Rd man/dense2sparse.Rd man/differential_interactions.HiCglm.Rd man/do_pca.Rd man/dominating_signal.HiCcomparator.Rd man/hicdiff.HiCglm.Rd man/hicdiff2mtx.Rd man/image_plot_na.Rd man/interactions2tads.Rd man/interactions2zscores.Rd man/intersect_tads.Rd man/left.max.Rd man/local.max.Rd man/local.min.Rd man/map2tads.Rd man/mean_expected.Rd man/merge.HiCcomparator.Rd man/move_contacts.Rd man/pc2mtx.Rd man/pipe.Rd man/plotHiCglm.Rd man/plot_contact_map.Rd man/plot_diff_map.Rd man/plot_pc_vector.Rd man/plot_regions.Rd man/plot_with_inset.Rd man/proportions.Rd man/read_dense.Rd man/read_npz.Rd man/read_size.Rd man/remove_unmappable.Rd man/restore_unmappable_mtx.Rd man/restore_unmappable_vec.Rd man/right.min.Rd man/sample_hic_maps.Rd man/sample_tads.Rd man/save_npz.Rd man/significance.Rd man/sparse2dense.Rd man/sparse2interactions.Rd man/superdiag.Rd
rz6/DIADEM documentation built on May 8, 2019, 12:54 a.m.