Description Usage Arguments Value See Also
Given HiCglm object calculates enrichment p-values of Y | X or X | Y w.r.t. background models (separate for every diagonal (pool), see HiCglm for details
).
1 2 | ## S3 method for class 'HiCglm'
hicdiff(hic.glm)
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hic.glm |
object of class HiCglm |
list of data frames corresponding to Hi-C contact maps; each data frame contain columns: i, j, name, val.x, val.y, pvalue.x, qvalue.x, pvalue.y, qvalue.y where suffix indicates predictor variable, i.e. pvalue.x indicates E[Y | X] model, so resulting significance means enrichment of Y w.r.t. X
HiCglm
on how to construct HiCglm, significance
on how p-values are calculated
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