hicdiff.HiCglm: Computes differential (p-value/q-value) map.

Description Usage Arguments Value See Also

Description

Given HiCglm object calculates enrichment p-values of Y | X or X | Y w.r.t. background models (separate for every diagonal (pool), see HiCglm for details).

Usage

1
2
## S3 method for class 'HiCglm'
hicdiff(hic.glm)

Arguments

hic.glm

object of class HiCglm

Value

list of data frames corresponding to Hi-C contact maps; each data frame contain columns: i, j, name, val.x, val.y, pvalue.x, qvalue.x, pvalue.y, qvalue.y where suffix indicates predictor variable, i.e. pvalue.x indicates E[Y | X] model, so resulting significance means enrichment of Y w.r.t. X

See Also

HiCglm on how to construct HiCglm, significance on how p-values are calculated


rz6/DIADEM documentation built on Dec. 31, 2019, 3:51 a.m.