Description Usage Arguments Value
Randomly selects N
contacts from i
xor j
bins of given mtx.sparse
Hi-C contact map and moves them to cell (i
, j
). This method of producing artificial LRI preserves coverage of initial Hi-C contact map.
1 | move_contacts(mtx.sparse, i, j, N)
|
mtx.sparse |
data frame - Hi-C contact map in sparse format with columns: i, j, val, diagonal, name |
i |
numeric first region (row of Hi-C contact map) |
j |
numeric second region (column of Hi-C contact map) |
N |
numeric number of contacts to be moved from regions |
data frame with the same columns as mtx.sparse
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