binommix: Fit binomial mixture model on coverage data

In sa-lee/moimix: Estimating mulitplicity of infection from high-throughput sequencing data

Description

Fit binomial mixture model on coverage data

Usage

binommix(counts_matrix, sample.id, k, coverage_threshold = 0L, niter = 1000)

Arguments

counts_matrix	an alleleCounts object with ref and alt slots filled
sample.id	character sample.id to fit model on.
k	vector of mixture components to fit
coverage_threshold	exclude sites with total coverage < coverage_threshold
niter	number of iterations to run

sa-lee/moimix documentation built on April 23, 2020, 10:32 a.m.