API for sa-lee/moimix
Estimating mulitplicity of infection from high-throughput sequencing data

Global functions
alleleCounts Man page Source code
bafMatrix Man page Source code
barcodes Man page Source code
binommix Man page Source code
binommixCDF Man page Source code
binommixPDF Source code
callMajor Man page Source code
ciMM Man page Source code
collapseProbs Man page Source code
coverageBySNP Man page Source code
coverageBySample Man page Source code
dtbeta Man page Source code
dtexp Man page Source code
extractBarcode Man page Source code
extractPED Man page Source code
gambian_isolates Man page
generateWindows Man page Source code
getBarcodeVariants Man page Source code
getCoordinates Man page Source code
getDosage Man page Source code
getFws Man page Source code
getGATKInfo Man page Source code
getHeterozygosity Man page Source code
getHeterozygosityBySample Man page Source code
getMAF Man page Source code
getMSE Man page Source code
getTheta Man page Source code
global_pfalciparum_snps Man page
infomat Man page Source code
lltexp Man page Source code
mleTexp Man page Source code
moimix Man page
moimix-package Man page
mse Man page Source code
perSiteAlleleCoverage Man page Source code
perSiteCoverage Man page Source code
perSiteCoverageBySNP Man page Source code
perSiteCoverageBySample Man page Source code
perplexity Source code
plot.bafMatrix Man page Source code
plot.moimix Source code
processGATK Man page Source code
processVarscan Man page Source code
ptbeta Man page Source code
qtbeta Man page Source code
readEstMOI Man page Source code
rtbeta Man page Source code
rtexp Man page Source code
sampleMM Man page Source code
scaledProportion Man page Source code
seMM Man page Source code
simulateMOI Man page Source code
toProb Man page Source code
sa-lee/moimix documentation built on May 20, 2018, 12:28 a.m.