Files in sa-lee/moimix
Estimating mulitplicity of infection from high-throughput sequencing data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/binomial_mixture.R
R/binomial_mixture_utility.R
R/coil_functions.R
R/moimix.R
R/seqarray_process_baf_methods.R
R/seqarray_process_coverage.R
R/seqarray_process_helpers.R
R/seqarray_process_popgen.R
R/simple_moi_simulation.R
R/truncated_distributions.R
R/utility_functions.R
README.md
data/maf_summary.rda
inst/extdata/gambian_isolates.gds
man/alleleCounts.Rd
man/bafMatrix.Rd
man/barcodes.Rd
man/binommix.Rd
man/binommixCDF.Rd
man/callMajor.Rd
man/ciMM.Rd
man/coverageBySNP.Rd
man/coverageBySample.Rd
man/dtbeta.Rd
man/dtexp.Rd
man/extractBarcode.Rd
man/extractPED.Rd
man/gambian_isolates.Rd
man/generateWindows.Rd
man/getBarcodeVariants.Rd
man/getCoordinates.Rd
man/getDosage.Rd
man/getFws.Rd
man/getGATKInfo.Rd
man/getHeterozygosity.Rd
man/getHeterozygosityBySample.Rd
man/getMAF.Rd
man/getMSE.Rd
man/getTheta.Rd
man/infomat.Rd
man/maf_summary.Rd
man/moimix.Rd
man/mse.Rd
man/perSiteAlleleCoverage.Rd
man/perSiteCoverage.Rd
man/perSiteCoverageBySNP.Rd
man/perSiteCoverageBySample.Rd
man/plot.bafMatrix.Rd
man/readEstMOI.Rd
man/rtexp.Rd
man/sampleMM.Rd
man/scaledProportion.Rd
man/seMM.Rd
man/simulateMOI.Rd
moimix.Rproj
tests/testthat.R
tests/testthat/test-bafMatrix.R
tests/testthat/test-binommix.R
vignettes/introduction.Rmd
