Description Usage Arguments Details Note
View source: R/seqarray_process_popgen.R
Compute minor allele frequency
1 | getMAF(gdsfile)
|
gdsfile |
a |
Coverage based estimation of minor allele frequences. The MAF is computed by computing the minimum of the proportion of reads covering the reference and alternate allele over all samples.
Currently only supports gds files obtained from GATK callers
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