perSiteCoverageBySNP: Compute proportion of SNPs covered up to a lower bound of...

Description Usage Arguments Value

View source: R/seqarray_process_helpers.R

Description

Compute proportion of SNPs covered up to a lower bound of bases within each sample.

Usage

1
perSiteCoverageBySNP(gdsfile, threshold)

Arguments

gdsfile

a SeqVarGDSClass object

threshold

integer lower bound for coverage

Value

a vector of length equal to number of samples with the proportion of SNPs covered up to threshold


sa-lee/moimix documentation built on April 23, 2020, 10:32 a.m.