API for sa-lee/starmie
Population Structure Model Inference and Visualisation
| Global functions | |
|---|---|
| .JSD | Source code |
| .KLD | Source code |
| G | Source code Source code Source code |
| J | Source code |
| J_largeK | Source code |
| J_perm | Source code |
| `[.admixList` | Source code |
| `[.structList` | Source code |
| `[[.admixList` | Source code |
| `[[.structList` | Source code |
| addNoise | Source code |
| admix | Man page Source code |
| admixList | Man page Source code |
| averagePairWiseSimilarityH | Man page Source code |
| averageQ | Man page Source code |
| bestK | Man page Source code |
| bestK.admixList | Source code |
| bestK.structList | Source code |
| bestK_evanno | Source code |
| bestK_structure | Source code |
| calcThreshold | Source code |
| clumpak | Man page Source code |
| clumpp | Man page Source code |
| combineLogs | Source code |
| exampleAdmixture | Man page Source code |
| exampleStructure | Man page Source code |
| fineStruct | Man page Source code |
| getClusterAlleleFreqMat | Man page Source code |
| getClusterAlleleFreqMat.admix | Source code |
| getClusterAlleleFreqMat.struct | Source code |
| getCompleteAlleleFreqMat | Man page Source code |
| getCompleteAlleleFreqMat.struct | Source code |
| getD | Man page Source code |
| getFitStats | Man page Source code |
| getK | Man page Source code |
| getK.admix | Source code |
| getK.struct | Source code |
| getMCMC | Man page Source code |
| getPosterior | Man page Source code |
| getQ | Man page Source code |
| getQ.admix | Source code |
| getQ.struct | Source code |
| getStephens | Man page Source code |
| get_best_permutation | Source code |
| is.sequential | Source code |
| iterativeGreedy | Source code |
| largeKGreedy | Source code |
| loadAdmixture | Man page Source code |
| loadFineStructure | Man page Source code |
| loadStructure | Man page Source code |
| logit | Source code |
| memoryGreedy | Source code |
| mydplot | Source code |
| plotBar | Man page Source code |
| plotBar.admix | Source code |
| plotBar.matrix | Source code |
| plotBar.struct | Source code |
| plotFineStructDendro | Man page Source code |
| plotFineStructDendro.fineStruct | Source code |
| plotFineStructDendro.phylo | Source code |
| plotMCMC | Man page Source code |
| plotMCMC.struct | Source code |
| plotMCMC.structList | Source code |
| plotMDS | Man page Source code |
| plotMDS.admix | Source code |
| plotMDS.matrix | Source code |
| plotMDS.struct | Source code |
| plotMultiK | Man page Source code |
| plotMultiK.admixList | Source code |
| plotMultiK.list | Source code |
| plotMultiK.structList | Source code |
| plotMultiQ | Source code |
| plotPWCoancestry | Man page Source code |
| plotPWCoincidence | Man page Source code |
| plotQ | Source code |
| plotTreeBar | Man page Source code |
| plotTreeBar.admix | Source code |
| plotTreeBar.matrix | Source code |
| plotTreeBar.struct | Source code |
| plotTreeQ | Source code |
| print.admix | Source code |
| print.admixList | Source code |
| print.fineStruct | Source code |
| print.struct | Source code |
| print.structList | Source code |
| read_logfiles | Source code |
| runStructure | Man page Source code |
| simulateQ | Man page Source code |
| struct | Man page Source code |
| structList | Man page Source code |
