saezlab/COSMOS: COSMOS (Causal Oriented Search of Multi-Omic Space)
COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets based on prior knowledge of signaling, metabolic, and gene regulatory networks. It estimated the activities of transcrption factors and kinases and finds a network-level causal reasoning. Thereby, COSMOS provides mechanistic hypotheses for experimental observations across mulit-omics datasets.
Getting started
Browse package contents
Package details |
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| Bioconductor views | CellBiology GeneSignaling Metabolomics Network Pathways Proteomics Transcriptomics |
| Maintainer | |
| License | GPL-3 |
| Version | 1.9.1 |
| URL | https://github.com/saezlab/COSMOSR |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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