API for saezlab/COSMOS
COSMOS (Causal Oriented Search of Multi-Omic Space)
| Global functions | |
|---|---|
| HMDB_mapper_vec | Man page |
| binarize_with_sign | Source code |
| check_CARNIVAL_options | Source code |
| check_COSMOS_inputs | Source code |
| check_gene_names | Source code |
| check_inputs_for_CARNIVAL | Source code |
| check_network_data_coverage | Source code |
| compress_same_children | Man page Source code |
| cosmos_data | Man page Source code |
| createLinearColors | Man page Source code |
| decompress_moon_result | Man page Source code |
| decompress_solution_network | Man page Source code |
| decoupleRnival | Man page Source code |
| default_CARNIVAL_options | Man page Source code |
| discretize_input | Source code |
| display_node_neighboorhood | Man page Source code |
| extract_nodes_for_ORA | Man page Source code |
| filter_incohrent_TF_target | Man page Source code |
| filter_input_nodes_not_in_pkn | Source code |
| filter_pkn_expressed_genes | Source code |
| filter_transcriptional_regulations | Source code |
| format_COSMOS_res | Man page Source code |
| format_LR_ressource | Man page Source code |
| get_TF_activity_from_CARNIVAL | Source code |
| get_moon_scoring_network | Man page Source code |
| gmt_to_dataframe | Man page Source code |
| keep_controllable_neighbours | Source code |
| keep_observable_neighbours | Source code |
| limit_string_vec | Source code |
| load_tf_regulon_dorothea | Man page Source code |
| make_heatmap_color_palette | Man page Source code |
| meta_network | Man page |
| meta_network_cleanup | Man page Source code |
| moon | Man page Source code |
| new_cosmos_data | Source code |
| prepare_metab_inputs | Man page Source code |
| preprocess_COSMOS_core | Source code |
| preprocess_COSMOS_metabolism_to_signaling | Man page Source code |
| preprocess_COSMOS_signaling_to_metabolism | Man page Source code |
| print.cosmos_data | Man page Source code |
| process_CARNIVAL_results | Source code |
| reduce_solution_network | Man page Source code |
| runCARNIVAL_wrapper | Source code |
| run_COSMOS_metabolism_to_signaling | Man page Source code |
| run_COSMOS_signaling_to_metabolism | Man page Source code |
| toy_RNA | Man page |
| toy_metabolic_input | Man page |
| toy_network | Man page |
| toy_signaling_input | Man page |
| translate_column_HMDB | Man page Source code |
| translate_res | Man page Source code |
| validate_CARNIVAL_results | Source code |
| validate_cosmos_data | Source code |
| validate_cosmos_data_metabolism_to_signaling | Source code |
| validate_cosmos_data_signaling_to_metabolism | Source code |
| wide_ulm_res | Man page Source code |
