Description Usage Arguments Details Value Author(s) See Also Examples

This function cuts a model according to a bitstring optimised at T1, and simulates the model accordingly.

1 | ```
simulateT1(CNOlist, model, bStringT1, simList, indexList)
``` |

`CNOlist` |
a CNOlist object |

`model` |
a full model |

`bStringT1` |
a bitstring to cut the model, as output by |

`simList` |
a list of additional fields for simulation as created by |

`indexList` |
a list of indexes as created by indexFinder |

This function is a wrapper for simulatorT1, that cuts the model before simulating it

a matrix of simulated values, including all species in the model, i.e. to be
used as input of gaBinaryT2 (not implemented here) but not to be used directly
in `plotOptimResults.`

C.Terfve

cutAndPlotOptimResultsT1, simulatorT1

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | ```
# This will compute the output of a random model obtained by randomly selecting
# which gates of the initial models are included.
data(CNOlistToy,package="CellNOptR")
data(ToyModel,package="CellNOptR")
indicesToy<-indexFinder(CNOlistToy,ToyModel,verbose=FALSE)
ToyFields4Sim<-prep4sim(ToyModel)
simRes<-simulateT1(
CNOlist=CNOlistToy,
model=ToyModel,
bStringT1=round(runif(length(ToyModel$reacID))),
simList=ToyFields4Sim,
indexList=indicesToy)
``` |

saezlab/CellNOptR documentation built on June 26, 2018, 1:14 a.m.

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