R/CNOlistDREAM.R

In saezlab/CellNOptR: Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data

#' Data used for the DREAM3 challenge
#'
#' This data object contains the DREAM data used in the package vignette, 
#' already loaded and formatted as a CNOlist object. This is to be used with 
#' the model "DreamModel". This is a data collected on HepG2 cells cultivated
#' with or without stimulation of tgfa, ilk, mek12, pi3k and p38, in
#' combination with inhibition of igf1 and/or il1a.  Seven phosphoproteins
#' are measured using Luminex xMAP assays: akt, erk12, ikb, jnk12, p38, 
#' hsp27 and mek12.
#'
#' J. Saez-Rodriguez, L. G. Alexopoulos, J. Epperlein, R. Samaga, D. A.
#' Lauffenburger, S. Klamt and P. K. Sorger. Discrete logic modeling as a means to
#' link protein signaling networks with functional analysis of mammalian signal
#' transduction, Molecular Systems Biology, 5:331, 2009.
#' 
#' Prill RJ, Marbach D, Saez-Rodriguez J, Sorger PK, Alexopoulos LG, Xue X,
#' Clarke ND, Altan-Bonnet G, and Stolovitzky G. Towards a rigorous assessment of
#' systems biology models: the DREAM3 challenges. PLoS One, 5(2):e9202, 2010.
#' 
#' @usage data(CNOlistDREAM)
"CNOlistDREAM"