check_corr: Check correlation (colinearity)

In saezlab/decoupleR: decoupleR: Ensemble of computational methods to infer biological activities from omics data

Check correlation (colinearity)

Description

Checks the correlation across the regulators in a network.

Usage

check_corr(
  network,
  .source = "source",
  .target = "target",
  .mor = "mor",
  .likelihood = NULL
)

Arguments

network	Tibble or dataframe with edges and it's associated metadata.
.source	Column with source nodes.
.target	Column with target nodes.
.mor	Column with edge mode of regulation (i.e. mor).
.likelihood	Deprecated argument. Now it will always be set to 1.

Value

Correlation pairs tibble.

Examples

inputs_dir <- system.file("testdata", "inputs", package = "decoupleR")
net <- readRDS(file.path(inputs_dir, "net.rds"))
check_corr(net, .source='source')

saezlab/decoupleR documentation built on Oct. 21, 2024, 8:47 a.m.