get_resource: Wrapper to access resources inside Omnipath. This wrapper...

In saezlab/decoupleR: decoupleR: Ensemble of computational methods to infer biological activities from omics data

Wrapper to access resources inside Omnipath. This wrapper allows to easily query different prior knowledge resources. To check available resources run decoupleR::show_resources(). For more information visit the official website for Omnipath.

Description

Wrapper to access resources inside Omnipath. This wrapper allows to easily query different prior knowledge resources. To check available resources run decoupleR::show_resources(). For more information visit the official website for Omnipath.

Usage

get_resource(name, organism = "human", ...)

Arguments

name	Name of the resource to query.
organism	Organism name or NCBI Taxonomy ID.
...	Passed to OmnipathR::import_omnipath_annotations.

Examples

df <- decoupleR::get_resource('SIGNOR')

saezlab/decoupleR documentation built on April 12, 2024, 10:41 a.m.